species:   Fugra
pid:       PID0911
parent:    FgmilR-7dps-88
paralog:   
locus:     NC_026477.1:7577460-7577533
matures:   ['AGAGCUGUAGGUCACCCUGUA', 'AGGGUAGUUUUGCCUGUGG']
srr:       SRR6516242
genome:    /Users/jax/+Genomes/Fungal_genomes/Fugra.GCF_000240135.3_ASM24013v3_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516242.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516242.cram NC_026477.1:7577460-7577533

42 out of bounds
26 alignments
24 proper strand
17 stranded perfect matches

          ***********************         *********************           
UGGCUCUGAGCCAGAGCUGUAGGUCACCCUGUAUCUUGUGGAUGAGGGUAGUUUUGCCUGUGGACUGAGGGCCG
.((((((.(((((.((..(((((.((((((.(((((...)))))))))).).))))))).))).)).)))))).
------------AGAGCUGUAGGUCACCCUGUA----------------------------------------- l=21 a=16 c
--------------------------------------------AGGGUAGUUUUGCCUGUGG----------- l=19 a=0 c*
------------AGAGCUGUAGGUCACCCUGUA----------------------------------------- l=21 a=16 ma
--------------------------------------------AGGGUAGUUUUGCCUGUGG----------- l=19 a=0 ma*

------------AGAGCUGUAGGUCACCCUGa------------------------------------------ l=20 a=2 
------------AGAGCUGUAGGUCACCCUGUA----------------------------------------- l=21 a=16 (c,ma)
------------AGAGCUGUAGGUCACCCUGaA----------------------------------------- l=21 a=1 
------------------------------------UGUGGAUGAGGGUAGUUUUGC----------------- l=21 a=1 
------------------------------------UGUGGAUGAGGGUAGUUUUGCa---------------- l=22 a=1 
------------------------------------------UGAGGGUAGUUUUGCCUGUGGAu--------- l=23 a=2 
-----------------------------------------------GUAGUUUUGCCUGUGGACUGAa----- l=22 a=1 

mb-01111
ax-1011011
ku-01
ss-111111111110
fn-111
